To convert from binary to Base64:
certutil -encode filename.cer newfilename.cer
To convert from Base64 to binary:
certutil -decode filename.cer newfilename.cer
Converting SSL Certificates | Base64 <-> Binary
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To convert from binary to Base64:
certutil -encode filename.cer newfilename.cer
To convert from Base64 to binary:
certutil -decode filename.cer newfilename.cer